PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00088A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 177aa    MW: 18218.6 Da    PI: 6.717
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00088AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.54.5e-38121121100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk+lrrkCa++Cv+ap+f+ e+ +++fa++hk+FGasn  kll+++p+ +r +a+++++yeA+ar+rdPvyG+v++i++l
  Oropetium_20150105_00088A  12 PCGACKFLRRKCAAECVFAPHFCTEDgAAQFAAIHKVFGASNAAKLLQQVPPGDRGEAAATVTYEAQARLRDPVYGCVAHIFAL 95 
                                7**********************99979******************************************************** PP

                     DUF260  84 qqqleqlkaelallkee 100
                                qqq+++l+ ++ l+k++
  Oropetium_20150105_00088A  96 QQQVATLQMQVLLAKAQ 112
                                *********99988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.45111113IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3712109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MASSGAVGSG APCGACKFLR RKCAAECVFA PHFCTEDGAA QFAAIHKVFG ASNAAKLLQQ  60
VPPGDRGEAA ATVTYEAQAR LRDPVYGCVA HIFALQQQVA TLQMQVLLAK AQVAQTMAAA  120
AGAQAAAAAS PLLQRWQMEP ESLSTQSSGC YSAPSCDGGS ASMYCFGEQE EGSYTR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0517341e-150EF051734.1 Zea mays RTCN mRNA, complete cds.
GenBankKJ7283751e-150KJ728375.1 Zea mays clone pUT6657 LOB transcription factor (LOB21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985693.12e-95PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB73e-56LBD16_ARATH; LOB domain-containing protein 16
TrEMBLK4AFS02e-95K4AFS0_SETIT; Uncharacterized protein
STRINGSi037727m6e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102623344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.17e-53lateral organ boundaries-domain 16